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1

Gas chromatography mass spectrometry–based metabolite profiling in plants

Lisec, Jan, Schauer, Nicolas, Kopka, Joachim, Willmitzer, Lothar, Fernie, Alisdair R

Journal:

Nature Protocols

Year:

2006

Language:

english

File:

PDF, 605 KB

english, 2006

2

Integrative functional genomics of salt acclimatization in the model legume Lotus japonicus

Diego H. Sanchez, Felix Lippold, Henning Redestig, Matthew A. Hannah, Alexander Erban, Ute Krämer, Joachim Kopka, Michael K. Udvardi

Journal:

The Plant Journal

Year:

2008

Language:

english

File:

PDF, 745 KB

english, 2008

3

Identification of Drought Tolerance Markers in a Diverse Population of Rice Cultivars by Expression and Metabolite Profiling

Degenkolbe, Thomas, Do, Phuc T., Kopka, Joachim, Zuther, Ellen, Hincha, Dirk K., Köhl, Karin I., Pandey, Girdhar K.

Journal:

Year:

2013

Language:

english

File:

PDF, 2.43 MB

english, 2013

4

Season Affects Yield and Metabolic Profiles of Rice (Oryza sativa) under High Night Temperature Stress in the Field

Schaarschmidt, Stephanie, Lawas, Lovely Mae F., Glaubitz, Ulrike, Li, Xia, Erban, Alexander, Kopka, Joachim, Jagadish, S. V. Krishna, Hincha, Dirk K., Zuther, Ellen

Journal:

International Journal of Molecular Sciences

Year:

2020

File:

PDF, 8.02 MB

2020

5

Metabolic profiling of ‘Conference’ pears under low oxygen stress

Romina Pedreschi, Christine Franck, Jeroen Lammertyn, Alexander Erban, Joachim Kopka, Maarten Hertog, Bert Verlinden, Bart Nicolaï

Journal:

Postharvest Biology and Technology

Year:

2009

Language:

english

File:

PDF, 732 KB

english, 2009

6

Metabolic contribution to salt stress in two maize hybrids with contrasting resistance

Richter, Julia Annika, Erban, Alexander, Kopka, Joachim, Zörb, Christian

Journal:

Year:

2015

Language:

english

File:

PDF, 2.43 MB

english, 2015

7

Metabolite Profiling Reveals Sensitivity-Dependent Metabolic Shifts in Rice (Oryza Sativa L.) Cultivars under High Night Temperature Stress

Glaubitz, Ulrike, Erban, Alexander, Kopka, Joachim, Hincha, Dirk K., Zuther, Ellen

Journal:

Procedia Environmental Sciences

Year:

2015

Language:

english

File:

PDF, 218 KB

english, 2015

8

Extrafloral nectar secretion from wounds of Solanum dulcamara

Lortzing, Tobias, Calf, Onno W., Böhlke, Marlene, Schwachtje, Jens, Kopka, Joachim, Geuß, Daniel, Kosanke, Susanne, van Dam, Nicole M., Steppuhn, Anke

Journal:

Year:

2016

Language:

english

File:

PDF, 3.19 MB

english, 2016

9

Integrative “omic” analysis reveals distinctive cold responses in leaves and roots of strawberry, Fragaria × ananassa ‘Korona’

Koehler, Gage, Rohloff, Jens, Wilson, Robert C., Kopka, Joachim, Erban, Alexander, Winge, Per, Bones, Atle M., Davik, Jahn, Alsheikh, Muath K., Randall, Stephen K.

Journal:

Frontiers in Plant Science

Year:

2015

Language:

english

File:

PDF, 6.96 MB

english, 2015

10

An automated GCxGC-TOF-MS protocol for batch-wise extraction and alignment of mass isotopomer matrixes from differential 13C-labelling experiments: a case study for photoautotrophic-mixotrophic grown Chlamydomonas reinhardtii cells

Stefan Kempa, Jan Hummel, Thorsten Schwemmer, Matthias Pietzke, Nadine Strehmel, Stefanie Wienkoop, Joachim Kopka, Wolfram Weckwerth

Journal:

Journal of Basic Microbiology

Year:

2009

Language:

english

File:

PDF, 381 KB

english, 2009

11

Retention index thresholds for compound matching in GC–MS metabolite profiling

Nadine Strehmel, Jan Hummel, Alexander Erban, Katrin Strassburg, Joachim Kopka

Journal:

Journal of Chromatography B

Year:

2008

Language:

english

File:

PDF, 614 KB

english, 2008

12

Construction and application of a mass spectral and retention time index database generated from plant GC/EI-TOF-MS metabolite profiles

Cornelia Wagner, Michael Sefkow, Joachim Kopka

Journal:

Year:

2003

Language:

english

File:

PDF, 1020 KB

english, 2003

13

Potato guard cells respond to drying soil by a complex change in the expression of genes related to carbon metabolism and turgor regulation

Joachim Kopka, Nicholas J. Provart, Bernd Müller-Röber

Journal:

The Plant Journal

Year:

1997

File:

PDF, 1.55 MB

1997

14

Simultaneous analysis of metabolites in potato tuber by gas chromatography–mass spectrometry

Ute Roessner, Cornelia Wagner, Joachim Kopka, Richard N. Trethewey, Lothar Willmitzer

Journal:

The Plant Journal

Year:

2000

Language:

english

File:

PDF, 306 KB

english, 2000

15

Phospholipase C is required for the control of stomatal aperture by ABA

Lee Hunt, Lewis N. Mills, Christophe Pical, Calum P. Leckie, Fiona L. Aitken, Joachim Kopka, Bernd Mueller-Roeber, Martin R. McAinsh, Alistair M. Hetherington, Julie E. Gray

Journal:

The Plant Journal

Year:

2003

Language:

english

File:

PDF, 186 KB

english, 2003

16

A rapid approach for phenotype-screening and database independent detection of cSNP/protein polymorphism using mass accuracy precursor alignment

Wolfgang Hoehenwarter, Joost T. van Dongen, Stefanie Wienkoop, Matthias Steinfath, Jan Hummel, Alexander Erban, Ronan Sulpice, Babette Regierer, Joachim Kopka, Peter Geigenberger, Wolfram Weckwerth

Journal:

Year:

2008

Language:

english

File:

PDF, 600 KB

english, 2008

17

Acyl carrier proteins from developing seeds ofCuphea lanceolataAit

Joachim Kopka, Markus Robers, Ricardo Schuch, Friedrich Spener

Journal:

Year:

1993

Language:

english

File:

PDF, 1.21 MB

english, 1993

18

Profiling of diurnal patterns of metabolite and transcript abundance in potato (Solanum tuberosum) leaves

Ewa Urbanczyk-Wochniak, Charles Baxter, Anna Kolbe, Joachim Kopka, Lee J. Sweetlove, Alisdair R. Fernie

Journal:

Year:

2005

Language:

english

File:

PDF, 530 KB

english, 2005

19

TransgenicArabidopsisplants can accumulate polyhydroxybutyrate to up to 4% of their fresh weight

Karen Bohmert, Ilse Balbo, Joachim Kopka, Volker Mittendorf, Christiane Nawrath, Yves Poirier, Gilbert Tischendorf, Richard N. Trethewey, Lothar Willmitzer

Journal:

Year:

2000

Language:

english

File:

PDF, 225 KB

english, 2000

20

Metabolite Profiling Reveals a Role for Atypical Cinnamyl Alcohol Dehydrogenase CAD1 in the Synthesis of Coniferyl Alcohol in Tobacco Xylem

Isabelle Damiani, Kris Morreel, Saïda Danoun, Geert Goeminne, Nabila Yahiaoui, Christiane Marque, Joachim Kopka, Eric Messens, Deborah Goffner, Wout Boerjan, Alain-Michel Boudet, Soizic Rochange

Journal:

Plant Molecular Biology

Year:

2005

Language:

english

File:

PDF, 401 KB

english, 2005

21

Inter-laboratory reproducibility of fast gas chromatography–electron impact–time of flight mass spectrometry (GC–EI–TOF/MS) based plant metabolomics

J. William Allwood, Alexander Erban, Sjaak de Koning, Warwick B. Dunn, Alexander Luedemann, Arjen Lommen, Lorraine Kay, Ralf Löscher, Joachim Kopka, Royston Goodacre

Journal:

Year:

2009

Language:

english

File:

PDF, 727 KB

english, 2009

22

Decision tree supported substructure prediction of metabolites from GC-MS profiles

Jan Hummel, Nadine Strehmel, Joachim Selbig, Dirk Walther, Joachim Kopka

Journal:

Year:

2010

Language:

english

File:

PDF, 662 KB

english, 2010

23

Physiologic and metabolic responses of wheat seedlings to elevated and super-elevated carbon dioxide

Lanfang H. Levine, Hirokazu Kasahara, Joachim Kopka, Alexander Erban, Ines Fehrl, Fatma Kaplan, Wei Zhao, Ramon C. Littell, Charles Guy, Raymond Wheeler, John Sager, Aaron Mills, Howard G. Levine

Journal:

Advances in Space Research

Year:

2008

Language:

english

File:

PDF, 498 KB

english, 2008

24

GC-EI-TOF-MS analysis of in vivo carbon-partitioning into soluble metabolite pools of higher plants by monitoring isotope dilution after 13CO2 labelling

Jan Huege, Ronan Sulpice, Yves Gibon, Jan Lisec, Karin Koehl, Joachim Kopka

Journal:

Year:

2007

Language:

english

File:

PDF, 358 KB

english, 2007

25

Comprehensive chemical derivatization for gas chromatography–mass spectrometry-based multi-targeted profiling of the major phytohormones

Claudia Birkemeyer, Ania Kolasa, Joachim Kopka

Journal:

Journal of Chromatography A

Year:

2003

Language:

english

File:

PDF, 597 KB

english, 2003

26

Metabolome and water status phenotyping of Arabidopsis under abiotic stress cues reveals new insight into ESK1 function

RAPHAEL LUGAN, MARIE-FRANÇOISE NIOGRET, LUCIE KERVAZO, FRANÇOIS ROBERT LARHER, JOACHIM KOPKA, ALAIN BOUCHEREAU

Journal:

Plant, Cell & Environment

Year:

2009

Language:

english

File:

PDF, 557 KB

english, 2009

27

Mining for robust transcriptional and metabolic responses to long-term salt stress: a case study on the model legume Lotus japonicus

DIEGO H. SANCHEZ, JEDRZEJ SZYMANSKI, ALEXANDER ERBAN, MICHAEL K. UDVARDI, JOACHIM KOPKA

Journal:

Plant, Cell & Environment

Year:

2010

Language:

english

File:

PDF, 823 KB

english, 2010

28

Photosynthesis and metabolism interact during acclimation of Arabidopsis thaliana to high irradiance and sulphur depletion

CRISTIÁN WULFF-ZOTTELE, NICOLE GATZKE, JOACHIM KOPKA, ARIEL ORELLANA, RAINER HOEFGEN, JOACHIM FISAHN, HOLGER HESSE

Journal:

Plant, Cell & Environment

Year:

2010

Language:

english

File:

PDF, 1.36 MB

english, 2010

29

Comparative ionomics and metabolomics in extremophile and glycophytic Lotus species under salt stress challenge the metabolic pre-adaptation hypothesis

DIEGO H. SANCHEZ, FERNANDO L. PIECKENSTAIN, FRANCISCO ESCARAY, ALEXANDER ERBAN, UTE KRAEMER, MICHAEL K. UDVARDI, JOACHIM KOPKA

Journal:

Plant, Cell & Environment

Year:

2011

Language:

english

File:

PDF, 758 KB

english, 2011

30

Comparative metabolomics of drought acclimation in model and forage legumes

DIEGO H. SANCHEZ, FRANZISKA SCHWABE, ALEXANDER ERBAN, MICHAEL K. UDVARDI, JOACHIM KOPKA

Journal:

Plant, Cell & Environment

Year:

2012

Language:

english

File:

PDF, 645 KB

english, 2012

31

Global changes in transcription orchestrate metabolic differentiation during symbiotic nitrogen fixation in Lotus japonicus

Gillian Colebatch, Guilhem Desbrosses, Thomas Ott, Lene Krusell, Ombretta Montanari, Sebastian Kloska, Joachim Kopka, Michael K. Udvardi

Journal:

The Plant Journal

Year:

2004

Language:

english

File:

PDF, 275 KB

english, 2004

32

DOF transcription factor AtDof1.1 (OBP2) is part of a regulatory network controlling glucosinolate biosynthesis in Arabidopsis

Aleksandra Skirycz, Michael Reichelt, Meike Burow, Claudia Birkemeyer, Jakub Rolcik, Joachim Kopka, Maria Inès Zanor, Jonathan Gershenzon, Miroslav Strnad, Jan Szopa, Bernd Mueller-Roeber, Isabell Wit

Journal:

The Plant Journal

Year:

2006

Language:

english

File:

PDF, 815 KB

english, 2006

33

A plastid-localized glycogen synthase kinase 3 modulates stress tolerance and carbohydrate metabolism

Stefan Kempa, Wilfried Rozhon, Jozef Šamaj, Alexander Erban, František Baluška, Thomas Becker, Joachim Haselmayer, Enrico Schleiff, Joachim Kopka, Heribert Hirt, Claudia Jonak

Journal:

The Plant Journal

Year:

2007

Language:

english

File:

PDF, 1012 KB

english, 2007

34

Transcript and metabolite profiling during cold acclimation of Arabidopsis reveals an intricate relationship of cold-regulated gene expression with modifications in metabolite content

Fatma Kaplan, Joachim Kopka, Dong Yul Sung, Wei Zhao, Mick Popp, Ron Porat, Charles L. Guy

Journal:

The Plant Journal

Year:

2007

Language:

english

File:

PDF, 1.16 MB

english, 2007

35

Regulation of arbuscular mycorrhization by apoplastic invertases: enhanced invertase activity in the leaf apoplast affects the symbiotic interaction

Sara Schaarschmidt, Joachim Kopka, Jutta Ludwig-Müller, Bettina Hause

Journal:

The Plant Journal

Year:

2007

Language:

english

File:

PDF, 989 KB

english, 2007

36

Molecular phenotyping of lignin-modified tobacco reveals associated changes in cell-wall metabolism, primary metabolism, stress metabolism and photorespiration

Rebecca Dauwe, Kris Morreel, Geert Goeminne, Birgit Gielen, Antje Rohde, Jos Van Beeumen, John Ralph, Alain-Michel Boudet, Joachim Kopka, Soizic F. Rochange, Claire Halpin, Eric Messens, Wout Boerjan

Journal:

The Plant Journal

Year:

2007

Language:

english

File:

PDF, 692 KB

english, 2007

37

Metabolic profiling reveals local and systemic responses of host plants to nematode parasitism

Julia Hofmann, Abd El Naser El Ashry, Shahbaz Anwar, Alexander Erban, Joachim Kopka, Florian Grundler

Journal:

The Plant Journal

Year:

2010

Language:

english

File:

PDF, 434 KB

english, 2010

38

Metabolome and water homeostasis analysis of Thellungiella salsuginea suggests that dehydration tolerance is a key response to osmotic stress in this halophyte

Raphaël Lugan, Marie-Françoise Niogret, Laurent Leport, Jean-Paul Guégan, François Robert Larher, Arnould Savouré, Joachim Kopka, Alain Bouchereau

Journal:

The Plant Journal

Year:

2010

Language:

english

File:

PDF, 1022 KB

english, 2010

39

Metabolomics of temperature stress

Charles Guy, Fatma Kaplan, Joachim Kopka, Joachim Selbig, Dirk K. Hincha

Journal:

Physiologia Plantarum

Year:

2008

Language:

english

File:

PDF, 552 KB

english, 2008

40

Teaching (and learning from) metabolomics: The 2006 PlantMetaNet ETNA Metabolomics Research School

Christoph Böttcher, Danilo Centeno, Jens Freitag, Rainer Höfgen, Karin Köhl, Joachim Kopka, Juergen Kroymann, Andrea Matros, Hans-Peter Mock, Stefan Neumann, Marina Pfalz, Edda Von Roepenack-Lahaye, N

Journal:

Physiologia Plantarum

Year:

2008

Language:

english

File:

PDF, 793 KB

english, 2008

41

Plant metabolomics coming of age

Charles Guy, Joachim Kopka, Thomas Moritz

Journal:

Physiologia Plantarum

Year:

2008

Language:

english

File:

PDF, 68 KB

english, 2008

42

Discovering plant metabolic biomarkers for phenotype prediction using an untargeted approach

Matthias Steinfath, Nadine Strehmel, Rolf Peters, Nicolas Schauer, Detlef Groth, Jan Hummel, Martin Steup, Joachim Selbig, Joachim Kopka, Peter Geigenberger, Joost T. Van Dongen

Journal:

Plant Biotechnology Journal

Year:

2010

Language:

english

File:

PDF, 342 KB

english, 2010

43

Hybrid weakness controlled by the dosage-dependent lethal (DL) gene system in common bean (Phaseolus vulgaris) is caused by a shoot-derived inhibitory signal leading to salicylic acid-associated root death

Matthew A. Hannah, K. Melanie Krämer, Valerie Geffroy, Joachim Kopka, Matthew W. Blair, Alexander Erban, C. Eduardo Vallejos, Arnd G. Heyer, Francis E. T. Sanders, Paul A. Millner, David J. Pilbeam

Journal:

New Phytologist

Year:

2007

Language:

english

File:

PDF, 494 KB

english, 2007

44

10.1038/81137

Fiehn, Oliver, Kopka, Joachim, Dörmann, Peter, Altmann, Thomas, Trethewey, Richard N., Willmitzer, Lothar

Journal:

Nature Biotechnology

Year:

2000

Language:

english

File:

PDF, 363 KB

english, 2000

45

Parallel analysis of transcript and metabolic profiles: a new approach in systems biology

Urbanczyk-Wochniak, Ewa, Luedemann, Alexander, Kopka, Joachim, Selbig, Joachim, Roessner-Tunali, Ute, Willmitzer, Lothar, Fernie, Alisdair R.

Journal:

Year:

2003

Language:

english

File:

PDF, 134 KB

english, 2003

46

Plant metabolomics reveals conserved and divergent metabolic responses to salinity

Diego H. Sanchez, Mohammad R. Siahpoosh, Ute Roessner, Michael Udvardi, Joachim Kopka

Journal:

Physiologia Plantarum

Year:

2008

Language:

english

File:

PDF, 694 KB

english, 2008

47

Ca2+/phospholipid-binding (C2) domain in multiple plant proteins: novel components of the calcium-sensing apparatus

Joachim Kopka, Christophe Pical, Alistair M. Hetherington, Bernd Müller-Röber

Journal:

Plant Molecular Biology

Year:

1998

Language:

english

File:

PDF, 218 KB

english, 1998

48

Comprehensive metabolic profiling and phenotyping of interspecific introgression lines for tomato improvement

Schauer, Nicolas, Semel, Yaniv, Roessner, Ute, Gur, Amit, Balbo, Ilse, Carrari, Fernando, Pleban, Tzili, Perez-Melis, Alicia, Bruedigam, Claudia, Kopka, Joachim

Journal:

Nature Biotechnology

Year:

2006

Language:

english

File:

PDF, 578 KB

english, 2006

49

Genetic and genomic analysis of legume flowers and seeds

Claire Domoney, Gérard Duc, TH Noel Ellis, Cristina Ferrándiz, Christian Firnhaber, Karine Gallardo, Julie Hofer, Joachim Kopka, Helge Küster, Franciso Madueño, Nathalie G Munier-Jolain, Klaus Mayer,

Journal:

Current Opinion in Plant Biology

Year:

2006

Language:

english

File:

PDF, 162 KB

english, 2006

50

Metabolite profiling reveals novel multi-level cold responses in the diploid model Fragaria vesca (woodland strawberry)

Jens Rohloff, Joachim Kopka, Alexander Erban, Per Winge, Robert C. Wilson, Atle M. Bones, Jahn Davik, Stephen K. Randall, Muath K. Alsheikh

Journal:

Year:

2012

Language:

english

File:

PDF, 2.34 MB

english, 2012